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Izbrane objave raziskovalcev NLZOH 2015–2020

1.01 Izvirni znanstveni članek

MAHNIČ, Aleksander, BRESKVAR, Martin, DŽEROSKI, Sašo, SKOK, Pavel, PINTAR, Špela, RUPNIK, Maja. Distinct types of gut microbiota dysbiosis in hospitalized gastroenterological patients are disease non-related and characterized with the predominance of either Enterobacteriaceae or Enterococcus. Frontiers in microbiology, ISSN 1664-302X, Feb. 2020, vol. 11, str. 1–10, ilustr. https://www.frontiersin.org/articles/10.3389/fmicb.2020.00120/full, doi: 10.3389/fmicb.2020.00120. [COBISS.SI-ID 33165351], kategorija: 1A1 (Z, A’, A1/2); 

SUSIČ, Nik, JANEŽIČ, Sandra, RUPNIK, Maja, GERIČ STARE, Barbara. Whole genome sequencing and comparative genomics of two nematicidal bacillus strains reveals a wide Range of Possible Virulence Factors. G3, ISSN 2160-1836, Jan 2020, vol. , iss. , str. 1–27, ilustr., doi: 10.1534/g3.119.400716. [COBISS.SI-ID 5948776], kategorija: 1A2 (Z, A1/2);  

MOHAN, Tamilselvan, ČAS, Alja, BRAČIČ, Matej, PLOHL, Olivija, VESEL, Alenka, RUPNIK, Maja, FRAS ZEMLJIČ, Lidija, REBOL, Janez. Highly protein repellent and antiadhesive polysaccharide biomaterial coating for urinary catheter applications. ACS biomaterials science & engineering, ISSN 2373-9878, 2019, vol. 5, issue 11, str. 5825–5832. https://pubs.acs.org/doi/10.1021/acsbiomaterials.9b01288, doi: 10.1021/acsbiomaterials.9b01288. [COBISS.SI-ID 22666774], kategorija: 1A1 (Z, A’, A1/2); 

KIRINČIČ, Stanislava, ŠÖMEN JOKSIĆ, Agnes, ZUPAN, Marko, IVANOŠ, Jerica, REP, Pija, ROTTER, Ester, IVARTNIK, Matej, GRČMAN, Helena. Lead and cadmium in foods/drinking water from Slovenian market/taps: Estimation of overall chronic dietary exposure and health risks. Food additives & contaminants. Part A., Chemistry, analysis, control, exposure & risk assessment, ISSN 1944-0049, 2019, vol. 36, no. 10, str. 1522–1537, doi: 10.1080/19440049.2019.1628355. [COBISS.SI-ID 9290361], kategorija: 1A2 (Z, A1/2); uvrstitev: SCI, Scopus, MBP; tip dela je verificiral OSICM;

TKALEC, Valerija, JANEŽIČ, Sandra, SKOK, Barbara, SIMONIČ, Tamara, MESARIČ, Simon, VRABIČ, Tanja, RUPNIK, Maja. High Clostridium difficile contamination rates of domestic and imported potatoes compared to some other vegetables in Slovenia. Food microbiology, ISSN 1095-9998, apr. 2019, vol. 78, str. 194–200. https://www.sciencedirect.com/science/article/pii/S0740002018306105, doi: 10.1016/j.fm.2018.10.017. [COBISS.SI-ID 512843320], kategorija: 1A1 (Z, A’, A1/2);

TREVEN, Primož, MAHNIČ, Aleksander, RUPNIK, Maja, GOLOB, Majda, PIRŠ, Tina, BOGOVIČ MATIJAŠIĆ, Bojana, MOHAR LORBEG, Petra. Evaluation of human milk microbiota by 16S rRNA gene next-generation sequencing (NGS) and cultivation/MALDI-TOF mass spectrometry identification. Frontiers in microbiology, ISSN 1664-302X, 2019, vol. 10, art. no. 2612, str. 1–12, ilustr. https://www.frontiersin.org/articles/10.3389/fmicb.2019.02612/full, doi: 10.3389/fmicb.2019.02612. [COBISS.SI-ID 4326792], kategorija: 1A1 (Z, A’, A1/2); uvrstitev: SCI, Scopus, MBP; tip dela je verificiral OSICN;

LEŠNIK, Uroš, MONGUS, Domen, JESENKO, David. Predictive analytics of PM[sup]10 concentration levels using detailed traffic data. Transportation research. Part D, Transport and environment, ISSN 1361-9209. [Print ed.], Feb. 2019, vol. 67, str. 131–141, doi: 10.1016/j.trd.2018.11.015. [COBISS.SI-ID 21921558], kategorija: 1A1 (Z, A”, A’, A1/2); 

SEUGENDO, Mwanaisha, JANSSEN, Iryna, LANG, Vanessa, HASIBUAN, Irene, BOHNE, Wolfgang, COOPER, Paul, DANIEL, Rolf, GUNKA, Katrin, KUSUMAWATI, R. L., MSHANA, Stephen E., RUPNIK, Maja, et al. Prevalence and strain characterization of Clostridioides (Clostridium) difficile in representative regions of Germany, Ghana, Tanzania and Indonesia: a comparative multi-center cross-sectional study. Frontiers in microbiology, ISSN 1664-302X, 2018, vol. 9, f. 1–7. https://www.frontiersin.org/articles/10.3389/fmicb.2018.01843/full, doi: /10.3389/fmicb.2018.01843. [COBISS.SI-ID 512843576], kategorija: 1A1 (Z, A’, A1/2);

HORVAT, Sabina, RUPNIK, Maja. Interactions between Clostridioides difficile and fecal microbiota in in vitro batch model: growth, sporulation, and microbiota changes. Frontiers in microbiology, ISSN 1664-302X, 2018, vol. 9, f. 1–10. https://www.frontiersin.org/articles/10.3389/fmicb.2018.01633/full, doi: 10.3389/fmicb.2018.01633. [COBISS.SI-ID 512824376], kategorija: 1A1 (Z, A’, A1/2);

KNETSCH, C. W., KUMAR, N., FORSTER, S. C., CONNOR, T. R., BROWNE, H. P., HARMANUS, Celine, SANDERS, I. M., HARRIS, S. R., TURNER, L., MORRIS, T., RUPNIK, Maja, et al. Zoonotic transfer of Clostridium difficile harboring antimicrobial resistance between farm animals and humans. Journal of clinical microbiology, ISSN 1098-660X. [Online ed.], march 2018, vol. 56, iss. 3, f. 1–8. http://jcm.asm.org/content/56/3/e01384-17.full.pdf+html, doi: 10.1128/JCM.01384-17. [COBISS.SI-ID 512807992], kategorija: 1A1 (Z, A’, A1/2);

BLETZ, Stefan, JANEŽIČ, Sandra, HARMSEN, Dag, RUPNIK, Maja, MELLMANN, Alexander. Defining and evaluating a core genome multilocus sequence typing scheme for genome-wide typing of Clostridium difficile. Journal of clinical microbiology, ISSN 1098-660X. [Online ed.], 2018, vol. 56, iss. 6, f. 1–10. http://jcm.asm.org/content/56/6/e01987-17.long, doi: 10.1128/JCM.01987-17. [COBISS.SI-ID 512824120], kategorija: 1A1 (Z, A’, A1/2); 

GRMEK KOŠNIK, Irena, DERMOTA, Urška, RIBIČ, Helena, ŠTORMAN, Alenka, PETROVIČ, Živa, ŽOHAR ČRETNIK, Tjaša. Evaluation of single vs pooled swab cultures for detecting MRSA colonization. The Journal of hospital infection, ISSN 0195-6701, Feb. 2018, vol. 98, no. 2, str. 149–154, ilustr. http://www.sciencedirect.com/science/article/pii/S019567011730525X?via%3Dihub, doi: 10.1016/j.jhin.2017.09.016. [COBISS.SI-ID 33554905], kategorija: 1A1 (Z, A’, A1/2); 

GONÇALVES, José, GUTIÉRREZ-AGUIRRE, Ion, BALASUBRAMANIAN, Mukundh Narayanan, ZAGORŠČAK, Maja, RAVNIKAR, Maja, TURK, Valentina. Surveillance of human enteric viruses in coastal waters using concentration with methacrylate monolithic supports prior to detection by RT-qPCR. Marine pollution bulletin, ISSN 0025-326X, 2018, vol. 128, str. 307–317, doi: 10.1016/j.marpolbul.2018.01.040. [COBISS.SI-ID 4611663], kategorija: 1A1 (Z, A’, A1/2); 

MAHNIČ, Aleksander, RUPNIK, Maja. Different host factors are associated with patterns in bacterial and fungal gut microbiota in Slovenian healthy cohort. PloS one, ISSN 1932-6203, 2018, vol. 13, iss. 12, str. 1–17. https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0209209, doi: /10.1371/journal.pone.0209209. [COBISS.SI-ID 512875832], kategorija: 1A2 (Z, A1/2); 

JANEŽIČ, Sandra, MLAKAR, Sabina, RUPNIK, Maja. Dissemination of Clostridium difficile spores between environment and households: Dog paws and shoes. Zoonoses and public health, ISSN 1863-2378. [Online ed.], f. 1–10, ilustr. https://onlinelibrary.wiley.com/doi/epdf/10.1111/zph.12475, doi: 10.1111/zph.12475. [COBISS.SI-ID 512823864, kategorija: 1A1 (Z, A’, A1/2); 

KOVAČ, Jasna, STESSL, Beatrix, ČADEŽ, Neža, GRUNTAR, Igor, CIMERMAN, Mojca, STINGL, Kerstin, LUŠICKY, Marija, OCEPEK, Matjaž, WAGNER, Martin, SMOLE MOŽINA, Sonja. Population structure and attribution of human clinical Campylobacter jejuni isolates from central Europe to livestock and environmental sources. Zoonoses and public health, ISSN 1863-2378. [Online ed.], 2018, vol. 65, no. 1, str. 51–58, ilustr. http://onlinelibrary.wiley.com/doi/10.1111/zph.12366/full, doi: 10.1111/zph.12366. [COBISS.SI-ID 4777336], kategorija: 1A1 (Z, A’, A1/2); uvrstitev: SCI, Scopus, MBP; 

PREMROV BAJUK, Blanka, BABNIK, Katarina, SNOJ, Tomaž, MILČINSKI, Luka, PISLAK, Metka, ŠKOF, Martina, JENČIČ, Vlasta, FILAZI, Ayhan, ŠTAJNBAHER, Darinka, KOBAL, Silvestra. Coumaphos residues in honey, bee brood, and beeswax after Varroa treatment. Apidologie, ISSN 0044-8435, 2017, vol. 48, no. 5, str. 588–598. http://link.springer.com/article/10.1007/s13592-017-0501-y, doi: 10.1007/s13592-017-0501-y. [COBISS.SI-ID 4286330], kategorija: 1A1 (Z, A’, A1/2); 

BALESTRI, Martina, CRISAFULLI, Concetta, DONATO, Luigi, GIEGLING, Ina, CALATI, Raffaella, ANTYPA, Niki, SCHNEIDER, Barbara L., MARUŠIČ, Dragan, TAROZZI, Maria Eugenia, MARUŠIČ, Dorjan, PARAGI, Metka, HARTMANN, Annette M., KONTE, Bettina, MARSANO, Agnese, SERRETTI, Alessandro, RUJESCU, Dan. Nine differentially expressed genes from a post mortem study and their association with suicidal status in a sample of suicide completers, attempters and controls. Journal of Psychiatric Research, ISSN 0022-3956. [Print ed.], 2017, vol. 91, iss. 8, str. 98–104. http://dx.doi.org/10.1016/j.jpsychires.2017.03.009, doi: 10.1016/j.jpsychires.2017.03.009. [COBISS.SI-ID 1539566788], kategorija: 1A1 (Z, A’, A1/2); 

TAVČAR BENKOVIĆ, Eva, ŽIGON, Dušan, MIHAJLOVIČ, Vladimir, PETELINC, Tanja, JAMNIK, Polona, KREFT, Samo. Identification, in vitro and in vivo antioxidant activity, and gastrointestinal stability of lignans from silver fir (abies alba) wood extract. Journal of wood chemistry and technology, ISSN 0277-3813, 2017, vol. 37, no. 6, str. 467–477, ilustr. http://www.tandfonline.com/doi/abs/10.1080/02773813.2017.1340958, doi: 10.1080/02773813.2017.1340958. [COBISS.SI-ID 4795256], kategorija: 1A1 (Z, A’, A1/2); 

GOLLE, Andrej, JANEŽIČ, Sandra, RUPNIK, Maja. Low overlap between carbapenem resistant Pseudomonas aeruginosa genotypes isolated from hospitalized patients and wastewater treatment plants. PloS one, ISSN 1932-6203, 2017, vol. 12, iss. 10, str. 1–13. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0186736, doi: 10.1371/journal.pone.0186736. [COBISS.SI-ID 512751672], kategorija: 1A1 (Z, A’, A1/2); 

HORVAT, Sabina, MAHNIČ, Aleksander, BRESKVAR, Martin, DŽEROSKI, Sašo, RUPNIK, Maja. Evaluating the effect of Clostridium difficile conditioned medium on fecal microbiota community structure. Scientific reports, ISSN 2045-2322, 2017, vol. 7, 11 str. http://www.nature.com/articles/s41598-017-15434-1.pdf, doi: 10.1038/s41598-017-15434-1. [COBISS.SI-ID 512751416], kategorija: 1A1 (Z, A’, A1/2); 

ČEMAŽAR, Maja, AMBROŽIČ, Jerneja, PAVLIN, Darja, SERŠA, Gregor, POLI, Alessandro, KRHAČ LEVAČIĆ, Ana, TEŠIĆ, Nataša, LAMPREHT TRATAR, Urša, RAK, Mitja, TOZON, Nataša. Efficacy and safety of electrochemotherapy combined with peritumoral IL-12 gene electrotransfer of canine mast cell tumours. Veterinary and comparative oncology, ISSN 1476-5810, Jun. 2017, vol. 15, iss. 2, str. 641–654, doi: 10.1111/vco.12208. [COBISS.SI-ID 2248059], kategorija: 1A1 (Z, A’, A1/2); 

RAK, Mitja, KAVČIČ, Martina, TREBŠE, Rihard, CÖR, Andrej. Detection of bacteria with molecular methods in prosthetic joint infection: sonication fluid better than periprosthetic tissue. Acta orthopaedica, ISSN 1745-3674, 2016, vol. 87, iss. 4, str. 339–345, ilustr. http://www.tandfonline.com/doi/abs/10.3109/17453674.2016.1165558, doi: 10.3109/17453674.2016.1165558. [COBISS.SI-ID 1538215108], kategorija: 1A1 (Z, A’, A1/2); 

BROBERG, E., HUNGNES, Olav, SCHWEIGER, B., PROSENC, Katarina, DANIELS, R., GUIOMAR, R., IKONEN, N., KOSSYVAKIS, A., POZO, F., PUZELLI, S., et al. Improving influenza virological surveillance in Europe: strain-based reporting of antigenic and genetic characterisation data, 11 European countries, influenza season 2013/14. Eurosurveillance, ISSN 1560-7917. [Online ed.], 13. Oct. 2016, vol. 21, iss. 41, str. 1–13. http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=22612. [COBISS.SI-ID 32879577], 

TRČEK, Janja, MAHNIČ, Aleksander, RUPNIK, Maja. Diversity of the microbiota involved in wine and organic apple cider submerged vinegar production as revealed by DHPLC analysis and next-generation sequencing. International journal of food microbiology, ISSN 0168-1605. [Print ed.], 2016, vol. 223, str. 57–62, doi: 10.1016/j.ijfoodmicro.2016.02.007. [COBISS.SI-ID 21936392], kategorija: 1A1 (Z, A’, A1/2); 

JANSSEN, Iryna, COOPER, Paul, GUNKA, Katrin, RUPNIK, Maja, WETZEL, Daniela, ZIMMERMANN, Ortrud, GROß, Uwe. High prevalence of nontoxigenic Clostridium difficile isolated from hospitalized and non-hospitalized individuals in rural Ghana. International journal of medical microbiology, ISSN 1438-4221, 2016, vol. 306, iss. 8, str. 652–656. http://www.sciencedirect.com/science/article/pii/S1438422116302053, doi: 10.1016/j.ijmm.2016.09.004. [COBISS.SI-ID 512674360], kategorija: 1A2 (Z, A1/2); 

HORVAT, Gabrijela, KRANVOGL, Roman, PERVA UZUNALIĆ, Amra, KNEZ, Željko, NOVAK, Zoran. Optimisation of critical parameters during alginate aerogels’ production. Journal of non-crystalline solids, ISSN 0022-3093. [Print ed.], 1 July 2016, vol. 443, str. 112–117, doi: 10.1016/j.jnoncrysol.2016.04.014. [COBISS.SI-ID 19535382], kategorija: 1A1 (Z, A’, A1/2); 

STEYER, Andrej, JEVŠNIK, Monika, PETROVEC, Miroslav, POKORN, Marko, GROSEK, Štefan, FRATNIK STEYER, Adela, ŠOBA, Barbara, URŠIČ, Tina, CERAR KIŠEK, Tjaša, KOLENC, Marko, TRKOV, Marija, ŠPARL, Petra, DURAISAMY, Raja, LIPKIN, Ian W., TERZIĆ, Sara, KOLNIK, Mojca, MRVIČ, Tatjana, KAPOOR, Amit, STRLE, Franc. Narrowing of the diagnostic gap of acute gastroenteritis in children 0-6 years of age using a combination of classical and molecular techniques, delivers challenges in syndromic approach diagnostics. The Pediatric infectious disease journal, ISSN 0891-3668, Sep. 2016, vol. 35, no. 9, str. e262–e270, doi: 10.1097/INF.0000000000001208. [COBISS.SI-ID 32802521], kategorija: 1A1 (Z, A’, A1/2); 

JANEŽIČ, Sandra, POTOČNIK, Mojca, TKALEC, Valerija, RUPNIK, Maja. Highly divergent Clostridium difficile strains isolated from the environment. PloS one, ISSN 1932-6203, 2016, vol. 11, iss. 11, str. 1–12. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0167101, doi: 10.1371/journal.pone.0167101. [COBISS.SI-ID 512659256], kategorija: 1A1 (Z, A’, A1/2); 

COTOLAN, Nicoleta, RAK, Mitja, BELE, Marjan, CÖR, Andrej, MUREŞAN, Liana Maria, MILOŠEV, Ingrid. Sol-gel synthesis, characterization and properties of TiO2 and Ag−TiO2 coatings on titanium substrate. Surface & coatings technology, ISSN 0257-8972. [Print ed.], 2016, vol. 307, part A, str. 790–799, doi: 10.1016/j.surfcoat.2016.09.082. [COBISS.SI-ID 29991975], kategorija: 1A1 (Z, A’, A1/2); 

BANDELJ, Petra, BLAGUS, Rok, BRIŠKI, France, FRLIC, Olga, VERGLES RATAJ, Aleksandra, RUPNIK, Maja, OCEPEK, Matjaž, VENGUŠT, Modest. Identification of risk factors influencing Clostridium difficile prevalence in middle-size dairy farms. Veterinary research, ISSN 1297-9716, Mar. 2016, vol. 47, iss. 1, str. 1–11. http://veterinaryresearch.biomedcentral.com/articles/10.1186/s13567-016-0326-0, doi: 10.1186/s13567-016-0326-0. [COBISS.SI-ID 32539609], kategorija: 1A1 (Z, A’, A1/2); 

BALASUBRAMANIAN, Mukundh Narayanan, RAČKI, Nejc, GONÇALVES, José, KOVAČ, Katarina, TUŠEK ŽNIDARIČ, Magda, TURK, Valentina, RAVNIKAR, Maja, GUTIÉRREZ-AGUIRRE, Ion. Enhanced detection of pathogenic enteric viruses in coastal marine environment by concentration using methacrylate monolithic chromatographic supports paired with quantitative PCR. Water research, ISSN 0043-1354. [Print ed.], 2016, vol. 106, str. 405–414, doi: 10.1016/j.watres.2016.10.020. [COBISS.SI-ID 4037967], kategorija: 1A1 (Z, A”, A’, A1/2); 

BEAUTÉ, J., ZUCS, P., KORSUN, Neli, BRAGSTAD, K., ENOUF, V., KOSSYVAKIS, A., GRISKEVICIUS, Algirdas, OLINGER, C. M., MEIJER, Adam, PROSENC, Katarina, et al. Age-specific differences in influenza virus type and subtype distribution in the 2012/2013 season in 12 European countries. Epidemiology and infection, ISSN 0950-2688, 2015, vol. , iss. , str., tabele, graf. prikazi, doi: 10.1017/S0950268814003422. [COBISS.SI-ID 31811545], kategorija: 1A2 (Z, A1/2); 

KAFATOS, George, ANDREWS, Nick, MCCONWAY, K. J., ANASTASSOPOULOU, C., BARBARA, C., ORY, Fernando de, JOHANSEN, K, MOSSONG, J., PROSENC, Katarina, VRANCKX, Robert, et al. Estimating seroprevalence of vaccine-preventable infections: is it worth standardizing the serological outcomes to adjust for different assays and laboratories?. Epidemiology and infection, ISSN 0950-2688, Aug. 2015, vol. 143, iss. 11, str. 2269–2278, tabele, graf. prikazi, doi: 10.1017/S095026881400301X. [COBISS.SI-ID 31753177], kategorija: 1A2 (Z, A1/2); 

STEYER, Andrej, GUTIÉRREZ-AGUIRRE, Ion, RAČKI, Nejc, BEIGOT GLASER, Sara, BRAJER HUMAR, Barbara, STRAŽAR, Marjetka, ŠKRJANC, Igor, POLJŠAK PRIJATELJ, Mateja, RAVNIKAR, Maja, RUPNIK, Maja. The detection rate of enteric viruses and Clostridium difficile in a waste water treatment plant effluent. Food and environmental virology, ISSN 1867-0334, 2015, vol. 7, issue 2, str. 164–172, doi: 10.1007/s12560-015-9183-7. [COBISS.SI-ID 3326287], kategorija: 1A2 (Z, A1/2); 

KOVAČ, Jasna, ČADEŽ, Neža, STESSL, Beatrix, STINGL, Kerstin, GRUNTAR, Igor, OCEPEK, Matjaž, TRKOV, Marija, WAGNER, Martin, SMOLE MOŽINA, Sonja. High genetic similarity of ciprofloxacin-resistant Campylobacter jejuni in central Europe. Frontiers in microbiology, ISSN 1664-302X, Oct. 2015, vol. 6, art. 1169 (7 str.), ilustr., doi: 10.3389/fmicb.2015.01169. [COBISS.SI-ID 4570744], kategorija: 1A1 (Z, A’, A1/2); 

DERMOTA, Urška, MÜLLER PREMRU, Manica, ŠVENT KUČINA, Nataša, PETROVIČ, Živa, RIBIČ, Helena, RUPNIK, Maja, JANEŽIČ, Sandra, ZDOVC, Irena, GRMEK KOŠNIK, Irena. Survey of community-associated-methicillin-Resistant Staphylococcus aureus in Slovenia: identification of community-associated and livestock-associated clones. International journal of medical microbiology, ISSN 1438-4221, 2015, vol. 305, issue 6, str. 505–510, ilustr., doi: 10.1016/j.ijmm.2015.05.002. [COBISS.SI-ID 32015833], kategorija: 1A1 (Z, A’, A1/2); 

JANEŽIČ, Sandra, MARÍN, Mercedes, MARTÍN, Adoración, RUPNIK, Maja. A new type of toxin A-negative, toxin B-positive Clostridium difficile strain lacking a complete tcdA gene. Journal of clinical microbiology, ISSN 0095-1137, 2015, vol. 53, no. 2, str. 692–695, ilustr. http://jcm.asm.org/content/53/2/692.abstract, doi: 10.1128/JCM.02211-14. [COBISS.SI-ID 512512568], kategorija: 1A2 (Z, A1/2); 

KOBLAR, Alenka, TAVČAR, Gašper, PONIKVAR SVET, Maja. Stress syndrome response of nettle (Urtica dioica L.) grown in fluoride contaminated substrate to fluoride and fluorine accumulation pattern. Journal of fluorine chemistry, ISSN 0022-1139. [Print ed.], 2015, vol. 172, str. 7–12, doi: 10.1016/j.jfluchem.2015.01.006. [COBISS.SI-ID 28352039], kategorija: 1A2 (Z, A1/2); 

SILVEIRA SILVA, Rodrigo Otávio, RUPNIK, Maja, DINIZ, Amanda Nádia, VILELA, Eduardo Garcia, FARIA LOBATO, Francisco Carlos. Clostridium difficile ribotypes in humans and animals in Brazil. Memórias do Instituto Oswaldo Cruz, ISSN 1678-8060, 2015, vol. 110, iss. 8, str. 1062–1065. http://memorias.ioc.fiocruz.br/issues/past-issues/item/6074-0294_clostridium-difficile-ribotypes-in-humans-and-animals-in-brazil, doi: 10.1590/0074-02760150294. [COBISS.SI-ID 512578616], kategorija: 1A2 (Z, A1/2); 

DRAGOŠ, Anna, ŠTEFANIČ, Polonca, VATOVEC, Sabina, BEIGOT GLASER, Sara, RUPNIK, Maja, MANDIĆ MULEC, Ines. Exploring ComQXPA quorum-sensing diversity and biocontrol potential of Bacillus spp. isolates from tomato rhizoplane. Microbial biotechnology, ISSN 1751-7915. [Online ed.], 2015, vol. 8, issue 3, str. 527–540, doi: 10.1111/1751-7915.12258. [COBISS.SI-ID 4494968], kategorija: 1A1 (Z, A’, A1/2); 

NGUYEN, Hai D. T., SOEBIYANTO, Radina P., GROSS, Diane, JORGENSEN, Pernille, BUDA, Silke, BROMBERG, Michal, KAUFMAN, Zalman, PROSENC, Katarina, SOČAN, Maja, ALONSO, Tomás Vega, WIDDOWSON, Marc-Alain, KIANG, Richard K. Associations between meteorological parameters and influenza activity in Berlin (Germany), Ljubljana (Slovenia), Castile and León (Spain) and Israeli Districts. PloS one, ISSN 1932-6203, 2015, vol. 10, iss. 8, str. 1–21, ilustr. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0134701, doi: 10.1371/journal.pone.0134701. [COBISS.SI-ID 32218585], kategorija: 1A1 (Z, A’, A1/2); 

WALTER, Beata Maria, CARTMAN, Stephen, MINTON, Nigel Peter, BUTALA, Matej, RUPNIK, Maja. The SOS response master regulator LexA is associated with sporulation, motility and biofilm formation in Clostridium difficile. PloS one, ISSN 1932-6203, 2015, vol. 10, iss. 12, str. 1–17, ilustr., doi: 10.1371/journal.pone.0144763. [COBISS.SI-ID 3703631], kategorija: 1A1 (Z, A’, A1/2); 

1.02 Pregledni znanstveni članek

JANEŽIČ, Sandra, RUPNIK, Maja. Development and implementation of whole genome sequencing-based typing schemes for Clostridioides difficile. Frontiers in public health, ISSN 2296-2565, Oct. 2019, vol. 7, article 309, str. 1–7. https://www.frontiersin.org/articles/10.3389/fpubh.2019.00309/full, doi: 10.3389/fpubh.2019.00309. [COBISS.SI-ID 512940088], kategorija: 1A2 (Z, A’, A1/2); 

KOLAR, Boris, FINIZIO, Antonio. Assessment of environmental risks to groundwater ecosystems related to use of veterinary medicinal products. Regulatory toxicology and pharmacology, ISSN 0273-2300, avg. 2017, vol. 88, str. 303–309, ilustr., doi: 10.1016/j.yrtph.2017.02.009. [COBISS.SI-ID 91022081], kategorija: 1A1 (Z, A”, A’, A1/2); 

ABBOTT, Benjamin W., BARANOV, Viktor, MENDOZA-LERA, Clara, BALASUBRAMANIAN, Mukundh Narayanan, GONÇALVES, José, KRAUSE, Stefan, et al. Using multi-tracer inference to move beyond single-catchment ecohydrology: invited review. Earth-science reviews, ISSN 0012-8252. [Print ed.], 2016, vol. 160, issues , str. 19–42, ilustr. http://www.sciencedirect.com/science/article/pii/S0012825216301428, doi: 10.1016/j.earscirev.2016.06.014. [COBISS.SI-ID 4499791], kategorija: 1A1 (Z, A’, A1/2); 

RUPNIK, Maja, JANEŽIČ, Sandra. An update on Clostridium difficile toxinotyping. Journal of clinical microbiology, ISSN 0095-1137, 2016, vol. 54, no. 1, str. 13–18. http://jcm.asm.org/content/54/1/13.full.pdf+html, doi: 10.1128/JCM.02083-15. [COBISS.SI-ID 512578872], kategorija: 1A2 (Z, A1/2); 

1.03 Kratki znanstveni prispevek

DERMOTA, Urška, ZDOVC, Irena, ŠTRUMBELJ, Iztok, GRMEK KOŠNIK, Irena, RIBIČ, Helena, RUPNIK, Maja, GOLOB, Majda, ZAJC, Urška, BES, M., LAURENT, Frederic, MÜLLER PREMRU, Manica. Detection of methicillin-resistant Staphylococcus aureus carrying the mecC gene in human samples in Slovenia. Epidemiology and infection, ISSN 0950-2688, Apr. 2015, vol. 143, no. 5, str. 1105–1108, doi: 10.1017/S0950268814001861. [COBISS.SI-ID 3854714], kategorija: 1A2 (Z, A1/2); 

GRGIČ VITEK, Marta, FRELIH, Tatjana, UČAKAR, Veronika, FAFANGEL, Mario, JORDAN MARKOČIČ, Ondina, PROSENC, Katarina, KRAIGHER, Alenka. An outbreak of measles associated with an international dog show in Slovenia, November 2014. Eurosurveillance, ISSN 1560-7917. [Online ed.], Jan. 2015, vol. 20, iss. 3. http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=21012. [COBISS.SI-ID 31786969], kategorija: 1A1 (Z, A’, A1/2); 

RUPNIK, Maja. Toward a true bacteriotherapy for Clostridium difficile infection. The New England journal of medicine, ISSN 0028-4793. [Print ed.], 2015, vol. 372, no. 16, str. 1566–1568. http://www.nejm.org/doi/pdf/10.1056/NEJMcibr1500270, doi: 10.1056/NEJMcibr1500270. [COBISS.SI-ID 512496184], kategorija: 1A1 (Z, A”, A’, A1/2); 

1.16 Samostojni znanstveni sestavek ali poglavje v monografski publikaciji

JANEŽIČ, Sandra, GARNEAU, Julian R., MONOT, Marc. Comparative genomics of Clostridium difficile. V: MASTRANTONIO, Paola (ur.), RUPNIK, Maja (ur.). Updates on Clostridium difficile in Europe, (Advances in experimental medicine and biology, ISSN 2214-8019, Vol. 1050). Cham: Springer Nature. cop. 2018, str. 59–75, doi: 10.1007/978-3-319-72799-8. [COBISS.SI-ID 94935809], kategorija: 3B (Z, A1/2); 

RODRIGUEZ DIAZ, C., SEYBOLDT, C., RUPNIK, Maja. Non-human C. difficile reservoirs and sources: animals, food, environment. V: MASTRANTONIO, Paola (ur.), RUPNIK, Maja (ur.). Updates on Clostridium difficile in Europe, (Advances in experimental medicine and biology, ISSN 2214-8019, Vol. 1050). Cham: Springer Nature. cop. 2018, str. 227–243, doi: 10.1007/978-3-319-72799-8. [COBISS.SI-ID 94935297], kategorija: 3B (Z, A1/2); 

KOLAR, Boris, MOERMOND, Caroline, HICKMANN, Silke. Veterinary pharmaceuticals. V: HESTER, Ronald E. (ur.), HARRISON, Roy M. (ur.). Pharmaceuticals in the environment, (Issues in environmental science and technology, ISSN 1350-7583, 41). [Cambridge]: Royal Society of Chemistry, 2015, str. 255–285, graf. prikazi, doi: 10.1039/9781782622345-00255. [COBISS.SI-ID 84536065], kategorija: 3A (Z, A’, A1/2);

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